BioSODA (search over databases - Bgee & OMA prototype)
Bgee and OMA Demo Page
ID
Question
1
what are the scientific names of species and their taxa?
2
genes with lung in the description
3
In which species is the Mt-co1 gene present?
4
List the labels and identifiers of fruit fly genes in bgee
5
Human anatomical entities at young adult developmental stage
6
What are the anatomical entities where the apoc1 gene is expressed?
7
What is the number of anatomical entities per species and expression confidence ordered by species common name where the apoc1 gene is expressed?
8
What are the Anatomical entities in rats where the apoc1 gene is expressed?
9
Anatomical entities for which apoc1 is not expressed
10
anatomical entities at the mouse’s adult stage where the apoc1 gene is expressed
11
show all drosophila species
12
show me all rat proteins
13
How many proteins (and their labels) per species are present in OMA database?
14
Retrieve all proteins that are orthologous to ENSLACG00000002497?
15
What are the paralogs of the gene ENSLACG00000002497?
16
Retrieve proteins that are paralogous to HUMAN22168 and their cross reference to Uniprot.
17
Retrieve proteins that are orthologous to HUMAN22168 and their cross reference to Uniprot.
18
Retrieve all proteins per species that are orthologous to Oryctolagus cuniculus' APOCI or APOC1 related protein and their cross reference to Uniprot including Ensembl gene identifier.
19
Retrieve Oryctolagus cuniculus' proteins encoded by genes that are orthologous to Mus musculus' HBB-Y gene and their cross reference links to Uniprot
20
The percentage of proteins in Drosophila melanogaster that have at least one paralogous protein
21
What are the mouse proteins which are expressed in the liver and are orthologous to human INS protein.
22
The orthologs of a gene that is expressed in the fruit fly brain
23
genes in primates orthologous to a gene that is expressed in the fruit fly brain
24
paralogs of genes expressed in the liver of the rat
25
rat's tp53 paralog genes that are expressed in the brain
26
Show all fruit fly genes
27
What are the taxa available in Bgee?
28
Anatomical entities where FBgn0031395 is expressed
29
show fruit fly developmental stages
30
show mouse anatomical entities
To start, click on one of the above questions (timeout of SPARQL remote endpoint set to 1 minute since some queries might take long)
...or use the input field above to simply type in your question and then hit the button "Go"
For details regarding the data sources used, see Official
Bgee
and
OMA
websites